miR-QTL-Scan, a computational framework for the identification of miRNAs involved in metabolic diseases

Construction of protein interaction network for Mycobacterium tuberculosis

Oli2go: an automated multiplex oligonucleotide design tool

Fast Analysis of RNA-RNA Interaction Kinetics for Refining RNA Targeting Screens

Ultrafast and space-efficient k-mer indexing

Secure protocols for a-priori privacy checks in medical databases

Lyra - containerized microservices for browsing shared biomedical data

Long reads matter: The advantages of Nanopore long-read sequencing

High genomic diversity of multi-drug resistant wastewater Escherichia coli

Pairs of adjacent conserved non-coding elements separated by conserved genomic distances act as cis-regulatory units

Edgetic perturbation signatures reproducible across patients of a cancer type represent novel and known cancer biomarkers

Protein-protein interaction (PPI) network for Salmonella infected cells

A genome-wide scan for correlated mutations detects macromolecular and chromatin loop interactions in Arabidopsis thaliana.

Using gene expression to improve precision in receptor status determination

In-silico identification of genotoxic substances

Interaction of quercetin with transcriptional regulator LasR of Pseudomonas aeruginosa: Mechanistic insights of the inhibition of virulence through quorum sensing

Machine Learning and Mycobacterium tuberculosis

Tracing the genomic footprint of natural competence in bacterial genomes

Composing a dockerized Ecosystem for the Exchange and Visualization of Biological Networks

Bioinformatics analysis identifies the renoprotective factor dicarbonyl and L-xylulose reductase (DCXR) as prognostic chronic kidney disease biomarker

Complexity and Function in the Human Genome

Superiority of multiple random gene sets in predicting survival of patients with hepatocellular carcinoma

Hepamine - A Liver Disease Microarray Database, Visualization Platform and Data-Mining Resource

Measurable Residual Disease monitoring with next-generation sequencing

Independent component analysis provides insights into biological processes and clinical outcomes for melanoma patients

Towards a Systematic Understanding of Drug-Drug Interactions

Bioinformatic Analysis of FXR related ChIP-seq data

Stratification of macrolide treatment for community-acquired pneumonia

Dynamics of MinHash Values on Genomic q-Gram Sets

In-depth analysis of immunological and genetic tumor status in and across cancer types: impact of mutational signatures beyond total mutational load

The evolutionary traceability of proteins

Deep neural network approach to predict clinical outcomes in high-dimensional and smallsample data settings

Structural and functional factors explain the observed difference in sequence conservation between transmembrane and soluble domains.

PCRedux: machine learning helper tool for sigmoid curves

Big Data and Complex Network Analysis in Bionformatics

Entropic hourglass patterns of animal and plant development

A k-mer based Deep Learning Approach for Quantitative, Reference-free Prediction of Antibiotic Resistance Phenotypes from Next-Generation Sequencing Data

Essential Bioinformatics Web Services for Sequence Analyses

Constraining maximal intermolecular helix lengths improves RNA-RNA interaction prediction

Learning the Topology of Latent Signaling Networks from High Dimensional Transcriptional Intervention Effects

EBWS: Essential Bioinformatics Web Services for Sequence Analyses

Predicting potential drug-drug interactions using statistical learning

The Swiss Molecular Tumor Board: Comprehensive Molecular Cancer Diagnostics in the Clinics

The m6A reader protein YTHDC2 interacts with the small ribosomal subunit and the 5′-3′ exoribonuclease XRN1

Kernelized Rank Learning for Personalized Drug Recommendation

Flexible and interactive visualization of GFA sequence graphs

Transcriptome and proteome dynamics during pollen development and their visualization through VoronoiTreemaps

Efficient calculation of microbial production envelopes

Correspondence analysis of human brain organoid transcriptome data

ChimeraMATE: An algorithm for the de-novo detection of chimeric DNA sequences

New Approaches for Meta-Analysis and Network Meta-Analysis of Transcriptomics Data

Differential snoRNA expression in miRNA sequencing experiments

The RNA workbench

Origin of Enhancer Redundancy

Multi-omics and time-resolved data integration for drug response analysis

Integration of multi-omics lung cancer data through a patient-oriented and pathway-centric approach

DEUS: an R package for accurate small RNA profiling based on differential expression of unique sequences

Differential analysis of combinatorial protein complexes with CompleXChange

Protein vector representations for fast similarity search

M23D - MHC-II Model Database

Tamock - Sample-specific gold standards in metagenomics

Multilayered Network Framework for Biomedical Data Integration and Disease Gene Discovery

Metabolic adaptation of Chlamydia trachomatis during infection and RNA sequencing analysis of host response in STI patients

Cancer patient stratification by Greedy Symmetric Nonnegative Matrix Factorization

Simultaneous background correction and classification of infrared microscopic pixel spectra using deep stacked autoencoders

CLIP-Explorer: A Galaxy-Pipeline for iCLIP and eCLIP data.

High-throughput Immune Repertoire Sequencing Analysis using the Software ImmunExplorer

Identifying functionally interacting proteins via their phylogenetic profiles

Amino acid residue pseudopotentials, SNP annotations using 3D-structures

Gene regulatory networks in murine models of heart disease

Landscape of RNA translation in murine models of heart disease

Proteomics explains client specificity of the human translocon-associated protein complex in ER protein import

Designing functional molecules with DNArchitect

White Box Modeling, Variable Impact Analysis, and Interaction Network Identification in Biological and Medical Data Using Symbolic Regression

Discriminating Spontaneous Tumors from Exposure Induced Tumors in A/J Mice Lung Cancer Model

circtools: a one-stop software solution for circular RNA research

Multi-level network analysis of structural ensembles

Genome and transcriptome characterization of glycoengineered Nicotiana benthamiana

Towards physicochemical bioinformatics: an interactive web-based tool for visualizing and comparing physicochemical properties of biological sequences

Processing of paper-based case report forms using optical character recognition software for automated data transfer

Assessment of open reading frame coding potential using proteomic and genomic data.

From Minimum Inhibitory Concentrations to Resistance Phenotypes: Semi-Automated Breakpoint Interpretation

Live analysis and privacy-preserving real-time filtering in next-generation sequencing while the sequencer is still running (Poster to the talk)

Machine-Learning-Based Annotation Triage and Extraction of Microbial Phenotypic Traits from the Scientific Literature

Network-based approach to drug-gene interactions

NICE – Network Informed funCtional Enrichment

Benchmarking the impact of long-read correction methods

Detection of haplotype blocks for genome scaffolding in plants

Application of Machine Learning and Computer Vision Methods to Characterize Cancer Cells in Hodgkin Lymphoma

Modelling Segmental Duplications in the Human Genome

Determine ambiguous regions in public genomes

GENOME-WIDE SCAN FOR DIAGNOSTIC MARKERS FOR BUD BURST IN BEECH

The revised and extended BRENDA Structure Search

NoPeak: Binding Motif Discovery from ChIP-Seq Data without Peak Calling

Using Nanopore Sequencing for in vivo Cell Type-Specific RNA Expression Profiling

BRAKER2: Incorporating Protein Homology Information into Gene Prediction with Genemark-EP and Augustus

Network analysis of DNA methylation of visceral adipose tissue comparing obese individuals with and without type 2 diabetes

Quantitative Prediction of Transcription Activator-Like Effectors

CircRNA profiling in human cancer cells under hypoxic stress

Finding Syntenic Regions in Multiple Unannotated, Unaligned Genomes

3DPatch: tools for fast 3D structure visualization with residue conservation

Population structure and allele frequency clines in wild and cultivated beets (Beta vulgaris)

The inference of information transfer in biological systems

Extensions to Peptide Spectrum Match Validation by Semi-Supervised Machine Learning Methods

Small-scale phasing of somatic variants for neoantigen discovery using Microphaser

Modelling Dependencies Between Histone Modifications Using Deep Learning

An organism-specific hydrophobicity scale based on reference datasets

Complexity and Gene Enrichment in Vertebrate Genomes

An improved scoring scheme for local sequence-structure alignments to identify regulatory RNAs

RiboSNitches in complex cardiovascular diseases

EXOMEDA – The new text mining approach for organism-related information in BRENDA

Phylogenetic terraces and an efficient tree space exploration

Promising Serological Biomarkers to Diagnose Giant Cell Arteritis in a Large Cohort of Treatment-Naïve Patients

PICA-to-go: A fast microbial phenotype investigation pipeline

Does activation of specific transposable elements play a role in the development of glioblastoma?

Detection of Similar Strains in Metagenomic Assembly Bins from an Enrichment Culture

Design and development of a comprehensive online resource for the biotechnological important yeast Komagataella phaffii

Annotation of viral polyproteins

Comparative genomics of the pathogenic bacterium Tannerella forsythia

Deep Learning for drug-induced liver injury prediction

Using continuous bag of words to interpret the hidden information of protein sequences in electron transport proteins

Peptidome – DB: A community-driven proteogenomics database to curate the peptidome